PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016486489.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 322aa    MW: 35656.7 Da    PI: 9.3178
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016486489.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53.1e-08263304443
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      WT  Ed+ l++a k ++++   +W++Ia+ ++ gR+   c  r
   XP_016486489.1 263 WTSGEDLALLNALKTFPKDvamRWEKIAAAVP-GRSKAACMKR 304
                      ********************************.*******988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.011167220IPR001005SANT/Myb domain
SuperFamilySSF466892.42E-5169207IPR009057Homeodomain-like
PROSITE profilePS500905.529169204IPR017877Myb-like domain
CDDcd001670.00147170217No hitNo description
Gene3DG3DSA:1.10.10.603.6E-8253314IPR009057Homeodomain-like
PROSITE profilePS500907.155255304IPR017877Myb-like domain
SuperFamilySSF466895.15E-10259305IPR009057Homeodomain-like
SMARTSM007172.7E-5259311IPR001005SANT/Myb domain
PfamPF002495.0E-7263304IPR001005SANT/Myb domain
CDDcd001673.30E-7263309No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEFLDEDARP RFLLQSKPLQ QSNSDPETPT RSLCRPGIII SISLSLLFFA LSFLYFTIEP  60
FGSLLIWLSL SLLIGPFAPL SVTAGDIRVG LGPPIQDPPK DELSDSEPDA KKTNRRSNRP  120
TKKVVDFEPV LPEKVNGSVA NSEKINGSVA NSVKINGSVA NLEKINGSSE WSEGDEELLR  180
KMMGKHPVGK PGRWEAIAEG FNGRYRVENV IKKAKELGEK KMSDEDSYQR FLKDRKAVDK  240
RSESGNELDS ENVEVKKVVE SGWTSGEDLA LLNALKTFPK DVAMRWEKIA AAVPGRSKAA  300
CMKRMTVLKK DFRSSKSANA DT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016486489.10.0PREDICTED: uncharacterized protein F54F2.9-like
TrEMBLM1C8Q60.0M1C8Q6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000622210.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126681011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.12e-70MYB_related family protein